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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000727.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 94aa MW: 10012 Da PI: 7.8868 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 106.9 | 1.2e-33 | 26 | 83 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++rY eC+kNhAas+Gg+avDGC+Efmps +e + aaal+CaACgCHRnFHRreve+e Itr_sc000727.1_g00002.1 26 SIRYGECQKNHAASVGGYAVDGCREFMPSGEEGSGAAALTCAACGCHRNFHRREVETE 83 689**************************555589*******************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-16 | 27 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.9E-30 | 27 | 80 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.5E-27 | 28 | 80 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.434 | 29 | 79 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MKRHKVVVKR EQSSQSSANS SFAVSSIRYG ECQKNHAASV GGYAVDGCRE FMPSGEEGSG 60 AAALTCAACG CHRNFHRREV ETEVLNDVSS SNAS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007032530.1 | 5e-42 | Mini zinc finger 2 isoform 1 | ||||
Refseq | XP_007032531.1 | 4e-42 | Mini zinc finger 2 isoform 2, partial | ||||
Swissprot | Q9LJW5 | 2e-34 | MIF2_ARATH; Mini zinc finger protein 2 | ||||
TrEMBL | A0A061EEU8 | 5e-42 | A0A061EEU8_THECC; Mini zinc finger 2 isoform 1 | ||||
TrEMBL | A0A061EGD2 | 5e-42 | A0A061EGD2_THECC; Mini zinc finger 2 isoform 2 (Fragment) | ||||
STRING | VIT_14s0108g00810.t01 | 6e-41 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1105 | 24 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 1e-23 | mini zinc finger 2 |