PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000727.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ZF-HD

Protein Properties

Length: 94aa MW: 10012 Da PI: 7.8868

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000727.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	106.9	1.2e-33	26	83	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++rY eC+kNhAas+Gg+avDGC+Efmps +e + aaal+CaACgCHRnFHRreve+e Itr_sc000727.1_g00002.1 26 SIRYGECQKNHAASVGGYAVDGCREFMPSGEEGSGAAALTCAACGCHRNFHRREVETE 83 689************************555589*****************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-16	27	90	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.9E-30	27	80	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.5E-27	28	80	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.434	29	79	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MKRHKVVVKR EQSSQSSANS SFAVSSIRYG ECQKNHAASV GGYAVDGCRE FMPSGEEGSG 60 AAALTCAACG CHRNFHRREV ETEVLNDVSS SNAS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007032530.1	5e-42	Mini zinc finger 2 isoform 1
Refseq	XP_007032531.1	4e-42	Mini zinc finger 2 isoform 2, partial
Swissprot	Q9LJW5	2e-34	MIF2_ARATH; Mini zinc finger protein 2
TrEMBL	A0A061EEU8	5e-42	A0A061EEU8_THECC; Mini zinc finger 2 isoform 1
TrEMBL	A0A061EGD2	5e-42	A0A061EGD2_THECC; Mini zinc finger 2 isoform 2 (Fragment)
STRING	VIT_14s0108g00810.t01	6e-41	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1105	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	1e-23	mini zinc finger 2